GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
THCA | cis | rs4803468 | 1 | rs55986560 | chr19:41939835 | B3GNT8 | chr19:41931265-41934635:- | 0.35 | 8.02 | 8.45E-15 | Height |
THCA | cis | rs4803468 | 1 | rs55986560 | chr19:41939835 | EXOSC5 | chr19:41892278-41903256:- | 0.11 | 3.63 | 0.000309 | Height |
THCA | cis | rs73201462 | 1 | rs55989768 | chr3:128043004 | EEFSEC | chr3:127872313-128127488:+ | -0.19 | -3.44 | 0.000634 | Post bronchodilator FEV1;Post bronchodilator FEV1/FVC ratio |
THCA | cis | rs4765219 | 1 | rs55990776 | chr12:124447466 | ZNF664 | chr12:124457670-124499967:+ | -0.18 | -5.07 | 5.57E-7 | Waist-to-hip ratio adjusted for body mass index |
THCA | cis | rs6499255 | 1 | rs55992518 | chr16:69821407 | COG4 | chr16:70514473-70557457:- | -0.19 | -3.93 | 9.82E-5 | IgE levels |
THCA | cis | rs559928 | 1 | rs559928 | chr11:64150370 | GPR137 | chr11:64037534-64056965:+ | 0.15 | 3.63 | 0.00031 | Crohn's disease;Ulcerative colitis;Inflammatory bowel disease |
THCA | cis | rs559928 | 1 | rs559928 | chr11:64150370 | VEGFB | chr11:64002266-64006258:+ | 0.16 | 4.37 | 1.54E-5 | Crohn's disease;Ulcerative colitis;Inflammatory bowel disease |
THCA | cis | rs12047808 | 1 | rs55998153 | chr1:179453824 | C1orf125 | chr1:179335107-179523868:+ | 0.58 | 6.12 | 1.94E-9 | Multiple sclerosis (age of onset) |
THCA | cis | rs10794720 | 1 | rs56004802 | chr10:1159187 | IDI2 | chr10:1064847-1071799:- | 0.41 | 4.18 | 3.41E-5 | Chronic kidney disease;Glomerular filtration rate in non diabetics (creatinine) |
THCA | cis | rs8030605 | 1 | rs56005196 | chr15:56519009 | MNS1 | chr15:56720929-56757335:- | -0.24 | -3.51 | 0.000485 | Waist-to-hip ratio adjusted for body mass index |
THCA | cis | rs8030605 | 1 | rs56005196 | chr15:56519009 | TEX9 | chr15:56657644-56738071:+ | -0.34 | -5.81 | 1.12E-8 | Waist-to-hip ratio adjusted for body mass index |
THCA | cis | rs12780845 | 1 | rs56015036 | chr10:17226767 | TRDMT1 | chr10:17184983-17243681:- | -0.44 | -10.26 | 1.88E-22 | Homocysteine levels |
THCA | cis | rs12780845 | 1 | rs56015036 | chr10:17226767 | VIM | chr10:17270258-17279592:+ | -0.19 | -3.5 | 0.000503 | Homocysteine levels |
THCA | cis | rs3105593 | 1 | rs56015123 | chr15:50977228 | SPPL2A | chr15:50999739-51057910:- | 0.28 | 7.46 | 4.24E-13 | QT interval |
THCA | cis | rs2243480 | 1 | rs56016656 | chr7:65383481 | CCT6P1 | chr7:65216092-65228661:+ | 0.41 | 6.41 | 3.44E-10 | Diabetic kidney disease |