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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions ( ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs4803468 1 rs55986560 chr19:41939835 B3GNT8 chr19:41931265-41934635:- 0.35 8.02 8.45E-15 Height
THCA cis rs4803468 1 rs55986560 chr19:41939835 EXOSC5 chr19:41892278-41903256:- 0.11 3.63 0.000309 Height
THCA cis rs73201462 1 rs55989768 chr3:128043004 EEFSEC chr3:127872313-128127488:+ -0.19 -3.44 0.000634 Post bronchodilator FEV1;Post bronchodilator FEV1/FVC ratio
THCA cis rs4765219 1 rs55990776 chr12:124447466 ZNF664 chr12:124457670-124499967:+ -0.18 -5.07 5.57E-7 Waist-to-hip ratio adjusted for body mass index
THCA cis rs6499255 1 rs55992518 chr16:69821407 COG4 chr16:70514473-70557457:- -0.19 -3.93 9.82E-5 IgE levels
THCA cis rs559928 1 rs559928 chr11:64150370 GPR137 chr11:64037534-64056965:+ 0.15 3.63 0.00031 Crohn's disease;Ulcerative colitis;Inflammatory bowel disease
THCA cis rs559928 1 rs559928 chr11:64150370 VEGFB chr11:64002266-64006258:+ 0.16 4.37 1.54E-5 Crohn's disease;Ulcerative colitis;Inflammatory bowel disease
THCA cis rs12047808 1 rs55998153 chr1:179453824 C1orf125 chr1:179335107-179523868:+ 0.58 6.12 1.94E-9 Multiple sclerosis (age of onset)
THCA cis rs10794720 1 rs56004802 chr10:1159187 IDI2 chr10:1064847-1071799:- 0.41 4.18 3.41E-5 Chronic kidney disease;Glomerular filtration rate in non diabetics (creatinine)
THCA cis rs8030605 1 rs56005196 chr15:56519009 MNS1 chr15:56720929-56757335:- -0.24 -3.51 0.000485 Waist-to-hip ratio adjusted for body mass index
THCA cis rs8030605 1 rs56005196 chr15:56519009 TEX9 chr15:56657644-56738071:+ -0.34 -5.81 1.12E-8 Waist-to-hip ratio adjusted for body mass index
THCA cis rs12780845 1 rs56015036 chr10:17226767 TRDMT1 chr10:17184983-17243681:- -0.44 -10.26 1.88E-22 Homocysteine levels
THCA cis rs12780845 1 rs56015036 chr10:17226767 VIM chr10:17270258-17279592:+ -0.19 -3.5 0.000503 Homocysteine levels
THCA cis rs3105593 1 rs56015123 chr15:50977228 SPPL2A chr15:50999739-51057910:- 0.28 7.46 4.24E-13 QT interval
THCA cis rs2243480 1 rs56016656 chr7:65383481 CCT6P1 chr7:65216092-65228661:+ 0.41 6.41 3.44E-10 Diabetic kidney disease